Cocalc Iscimath 581 Compute Anything

CoCalc provides an online platform for performing computations without the need to install any software on your computer. It allows you to immediately start exploring in a variety of languages, with several unique features. One of the main benefits of CoCalc is that you can just fire it up and get to work. Later in this document we will discuss how to setup a reproducible programming environment, but for now, you can do the following to just get started. Create an account and project on CoCalc. If you are taking this as a course, then you should use the project you are invited to join as part of the course.

Purchase a license. A site license is required to access the internet from projects, e.g. to install software,and will provide for much better performance. While you can run your project without a license, this is really only appropriate for testing things. Students will be prompted for a term license from the course, but may use their own license if they wish to purchase something more long-term. Open your project and start exploring.

Students should see two projects that are automatically created for the course: Here is a checklist of tasks you should complete as soon as possible. In your CoCalc project, please check of these tasks as you complete them, and include any notes. Fig. 2 Example of the two projects you should see in your account on CoCalc. The first is the Shared Project we will work in together.

The second is my personal student project where I will keep my own notes and work.# Create an account on CoCalc using your WSU email. Once you do this, you should see at least two projects: One is a Shared Project I will use for work in class. You can interact with me here, and copy code etc. as needed.

The second is your private workspace for assignments, etc. The instructors can see and help you with this, but it is not shared with other class participants. (Feel free to create other projects as you need, but keep your work for this class in your class project.) These are notes about creating and maintaining this repository. They may be in a state of flux. Add test for anaconda-package version and issue warning.

Clean ~/.bash_aliases with make realclean. Try to activate the environment only once on CoCalc in Makefile. Deal with memory issues (mamba everywhere, or --override-channels on CoCalc). This cell adds /home/docs/checkouts/readthedocs.org/user_builds/wsu-phys-581-computation/checkouts/fall-2025/src to your path, and contains some definitions for equations and some CSS for styling the notebook. If things look a bit strange, please try the following: Molecular dynamics simulation of a projectile hitting a beam.

Navier-Stokes simulation of a viscous fluid flowing over a bump in a harmonic trap. Who: Graduate students or upper-level undergraduates from across the university with a strong preparation in mathematics (strong calculus and linear algebra with exposure to differential equations). Programming experience would be helpful, but we will provide support those with weaker backgrounds. When: MW(F)2-4pm: Fridays are part of the iSciMath Coffee Hours and will be for working on problems, discussions, etc. Instructor(s): Michael McNeil Forbes m.forbes+581@wsu.edu Office Hours: F2-4pm in Webster 1243, MW4pm (after class), or by appointment.

Course Homepage: https://schedules.wsu.edu/sectionInfo/prefix=Phys&term=Fall&year=2025&course=581 Title: Phys 581: Compute Anything – Effective Scientific Computing Recommended Preparation: Strong background in calculus, real and complex analysis, linear algebra, familiarity with differential equations, and basic programming skills. These are complete instructions for students to get started working with this project for use in the course and include managing a GitLab repository, with automated testing etc. Here are the general instructions. Some steps may require additional information if you are not familiar with the associated concepts (i.e.

setting up SSH keys). (Optional) Create an account and project on CoCalc. If you are taking the course, then you should use the project you are invited to join as part of the course. The instructions will generally assume you are working in the CoCalc project, but things will probably work out-of-the-box on Linux machines or Mac OS X. (No guarantees with Windows or other platforms.) If you encounter any problems, please file an issue. If you plan to use CoCalc, then either complete the remaining steps using an Online Linux Terminal in your project, or by connecting to CoCalc with SSH.

If you are running this on another platform, you must make sure that you have a Conda environment setup with anaconda-project >= 0.8.4. You can do this easily by installing Miniconda, then either updating the base environment: There are no formal prerequisites for the course, but I will expect you to be comfortable with the material discussed here, which contains links to additional resources should you need to refresh your knowledge. Please work with your classmates to try to share knowledge as needed. Generally, I will expect familiarity with the following: The most important prerequisite is the ability to communicate about and formulate complex problems in your field of study that would benefit from the techniques covered in this course.

Students will expected to actively engage with the techniques taught in this course, apply them to relevant problems in their domain of expertise, and to communicate about the efficacy to the class. Properties of Linear Operators (Self-Adjoint, Hermitian, Unitary, etc.), Matrix Factorization including the Singular Value Decomposition, Bases and Orthogonalization via Gram-Schmidt. Topology (notions of continuity), Calculus, Banach spaces (e.g. conditions for the existence of extrema), Fourier Analysis, Contour Integration, Conformal Maps. Formulation of differential equations, existence of solutions and boundary value requirements, Sturm-Liouville Theory.

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